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meRfi® Microbiome - The Digital Gut Microbiome Reference (incl. AI Chat)
Prebiotics, Probiotics, FMT / Manipulators of the Intestinal Microbiota

AuthorsReferences (Sources)

AuthorsReferences (Sources)

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Exometabolome

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Contents

The exometabolome refers to the entire collection or set of all exometabolites present in the extracellular environment at a given time
Zha & Punt 2013 Metabolites 3(1): 119-43
Chugh et al. 2025 Trends in Microbiology 33(5): 546

The exometabolome refers to the complete set of metabolites that are secreted or released by an organism into its surrounding environment
Douglas 2020 Phil Trans R Soc B 375: 20190250

These extracellular metabolites, also known as exometabolites, form a unique chemical "footprint" that reflects the metabolic activities of cells, tissues, or entire microbial communities
Douglas 2020 Phil Trans R Soc B 375: 20190250
Harden et al. 2021 Front Ce…

References (Sources)

Exometabolomic Analysis of Decidualizing Human Endometrial Stromal and Perivascular Cells
Harden et al. 2021 Front Cell Dev Biol 9: 626619
Exometabolomics approaches in studying the application of lignocellulosic biomass as fermentation feedstock
Zha & Punt 2013 Metabolites 3(1): 119-43
Review
High-throughput classiﬁcation of yeast mutants for functional genomics using metabolic footprinting
Allen et al. 2003 Nat Biotechnol 21: 692-696
Lactate production by Staphylococcus aureus bioﬁlm inhibits HDAC11 to reprogramme the host immune response during persistent infection
Heim et al. 2020 Nat Microbiol 5: 1271-1284
Metabolic footprinting and systems biology: the medium is the message
Kell et al. 2005 Nat Rev Microbiol 3: 557-565
Review
Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance
Yu et al. 2022a Nat Microbiol 7: 542-555
The microbial exometabolome: ecological resource and architect of microbial communities
Douglas 2020 Phil Trans R Soc B 375: 20190250

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